Bioinformatics Lab at Machine Intelligence Unit

TargetMiner

TargetMiner

A robust tool for microRNA target prediction with systematic identification of negative examples

Cite:
Sanghamitra Bandyopadhyay and Ramkrishna Mitra,"Targetminer:MicroRNA Target Prediction with Systematic Identification Of Tissue Specific Negative Examples", Bioinformatics, Vol. 25, no. 20, pp. 2625 - 2631, 2009.

MultiMiTar

MultiMiTar

An enhancement of TargetMiner with multiobjective feature selection and ranking of the predicted mRNA targets of a given microRNA

Cite:
Ramkrishna Mitra and Sanghamitra Bandyopadhyay,"MultiMiTar: A Novel Multi Objective Optimization based miRNA-Target Prediction Method", PLoS ONE 6(9): e24583. doi:10.1371/journal.pone.0024583

PuTmiR

PuTmiR

A database for extracting neighboring transcription factors of human microRNAs

Cite:
Sanghamitra Bandyopadhyay and Malay Bhattacharyya, PuTmiR: A database for extracting neighboring transcription factors of human microRNAs, BMC Bioinformatics, 11:190, 2010.

CAMi-Finder

CAMi-Finder

A tool for mining cancer associated miRNAs

Cite:
Not availavle as of now!

PmmR

PmmR

A database for putative microRNA-microRNA regulations

Cite:
Debarka Sengupta and Sanghamitra Bandyopadhyay, "Participation of MicroRNAs in Human Interactome: Extraction of MicroRNA-MicroRNA Regulations", Molecular BioSystems, vol. 7, pp. 1966-1973, DOI: 10.1039/C0MB00347F, 2011.