TargetMiner : Prediction of miRNA Targets
miRNA ID: hsa-miR-539-3p
miRNA Sequence: AUCAUACAAGGACAAUUUCUUU
| mRNA | Chromosome | 6mer (count) | 6mer (position) | 7mer-A1 (count) | 7mer-A1 (position) | 7mer-m8 (count) | 7mer-m8 (position) | 8mer (count) | 8mer (position) |
| NM_000176 | chr5 | 6 | 3808 3302 2778 1378 1289 1247 | - | - | 2 | 3620 332 | 2 | 3506 670 |
| NM_000202 | chrX | 2 | 3055 2652 | 1 | 2985 | 1 | 3891 | 2 | 3820 622 |
| NM_000337 | chr5 | 11 | 6630 5368 4372 4245 2406 2107 1829 1262 156 128 112 | 1 | 4551 | - | - | - | - |
| NM_000809 | chr4 | 5 | 8726 7564 7557 7225 1498 | 1 | 6192 | 2 | 7567 6678 | 1 | 659 |
| NM_000831 | chr1 | 10 | 4182 2482 2422 2377 2235 2221 2064 1968 1946 638 | - | - | 1 | 1973 | 1 | 6278 |
| NM_000912 | chr8 | 7 | 3535 3321 2445 1170 518 493 486 | 1 | 747 | - | - | 1 | 801 |
| NM_001002860 | chr14 | 4 | 4299 4137 4108 1716 | - | - | 1 | 1518 | 2 | 4572 3926 |
| NM_001003652 | chr18 | 8 | 8617 8604 7791 1702 1692 469 384 65 | 1 | 2646 | - | - | 1 | 2733 |
| NM_001003679 | chr1 | 3 | 1541 1462 1374 | 1 | 446 | 2 | 2047 222 | 1 | 2167 |
| NM_001004317 | chr6 | 4 | 4340 2982 892 259 | - | - | 3 | 3911 1555 234 | 2 | 3167 498 |
| NM_001005473 | chr5 | 6 | 4496 4485 2401 2002 1983 1936 | - | - | 3 | 4463 736 406 | 1 | 2179 |
| NM_001008220 | chr5 | 16 | 3356 3126 2908 2825 2803 1566 1554 1522 1431 1360 1310 1295 1255 1238 1196 1103 | - | - | 2 | 3916 2911 | - | - |
| NM_001008408 | chr7 | 10 | 6400 6348 5384 5154 5139 4285 2206 1762 1555 557 | - | - | 1 | 6362 | 1 | 6305 |
| NM_001009899 | chr3 | 6 | 5483 4545 1197 1183 1173 96 | 2 | 6418 1227 | - | - | 1 | 4535 |
| NM_001013620 | chr12 | 6 | 6376 6120 5956 5883 2406 295 | - | - | 2 | 6127 673 | 1 | 7454 |
| NM_001018067 | chr1 | 8 | 5031 3793 3781 3738 967 957 855 507 | 1 | 325 | 2 | 4877 3329 | 1 | 971 |
| NM_001018068 | chr1 | 8 | 5031 3793 3781 3738 967 957 855 507 | 1 | 325 | 2 | 4877 3329 | 1 | 971 |
| NM_001018069 | chr1 | 8 | 5031 3793 3781 3738 967 957 855 507 | 1 | 325 | 2 | 4877 3329 | 1 | 971 |
| NM_001018074 | chr5 | 6 | 3808 3302 2778 1378 1289 1247 | - | - | 2 | 3620 332 | 2 | 3506 670 |
| NM_001018075 | chr5 | 6 | 3808 3302 2778 1378 1289 1247 | - | - | 2 | 3620 332 | 2 | 3506 670 |
| NM_001018076 | chr5 | 6 | 3808 3302 2778 1378 1289 1247 | - | - | 2 | 3620 332 | 2 | 3506 670 |
| NM_001018077 | chr5 | 6 | 3808 3302 2778 1378 1289 1247 | - | - | 2 | 3620 332 | 2 | 3506 670 |
| NM_001024094 | chr5 | 6 | 3808 3302 2778 1378 1289 1247 | - | - | 2 | 3620 332 | 2 | 3506 670 |
| NM_001024855 | chr3 | 2 | 576 168 | - | - | - | - | 3 | 1592 1192 174 |
| NM_001024948 | chr1 | 2 | 2579 734 | 2 | 1108 207 | 3 | 2833 1068 30 | 2 | 2910 254 |
| NM_001025079 | chr3 | 7 | 3186 1289 1276 1268 1020 572 473 | - | - | 1 | 561 | 2 | 3192 1316 |
| NM_001039618 | chr11 | 6 | 5552 4776 4614 3828 809 365 | 1 | 4090 | 2 | 1037 372 | 1 | 3870 |
| NM_001040110 | chr7 | 3 | 1482 287 271 | 1 | 305 | 2 | 1485 298 | 2 | 415 390 |
| NM_001042603 | chr12 | 12 | 5345 4967 4961 4585 4354 3981 3858 3646 1874 1593 1510 1437 | 1 | 4629 | 1 | 2082 | 2 | 3650 1514 |
| NM_001257 | chr16 | 2 | 375 359 | - | - | 1 | 364 | 2 | 1115 1062 |
| NM_001364 | chr11 | 2 | 4072 807 | 2 | 4123 208 | 1 | 4077 | 2 | 593 151 |
| NM_001777 | chr3 | 7 | 3186 1289 1276 1268 1020 572 473 | - | - | 1 | 561 | 2 | 3192 1316 |
| NM_002006 | chr4 | 6 | 5756 4318 4122 3691 1353 749 | 1 | 5806 | 1 | 4323 | 1 | 5548 |
| NM_002092 | chr4 | 5 | 4939 4668 1463 1142 500 | 1 | 5095 | - | - | 2 | 4998 976 |
| NM_002310 | chr5 | 6 | 6269 4790 4583 2476 2351 656 | - | - | 2 | 6272 4117 | 2 | 2228 1628 |
| NM_002737 | chr17 | 7 | 6400 4559 4432 1850 1767 1757 1540 | 3 | 5610 5236 749 | - | - | 2 | 6688 6406 |
| NM_004432 | chr9 | 2 | 2321 1603 | - | - | 1 | 1627 | 2 | 1682 848 |
| NM_005011 | chr7 | 3 | 1482 287 271 | 1 | 305 | 2 | 1485 298 | 2 | 415 390 |
| NM_005056 | chr12 | 13 | 5589 5211 5205 4829 4598 4225 4102 3890 2118 1837 1754 1681 94 | 1 | 4873 | - | - | 2 | 3894 1758 |
| NM_005095 | chr1 | 1 | 2071 | - | - | 1 | 1654 | 2 | 1852 1625 |
| NM_005121 | chr17 | 5 | 3416 2965 1238 1210 705 | - | - | 1 | 1231 | 2 | 2783 399 |
| NM_005197 | chr14 | 5 | 5688 5573 5063 4846 1685 | - | - | 2 | 5066 1802 | 2 | 5927 5231 |
| NM_005238 | chr11 | 6 | 2250 2237 2229 2217 1086 825 | - | - | - | - | 4 | 3569 2241 2223 829 |
| NM_005359 | chr18 | 6 | 5740 5713 2139 1265 1082 651 | 2 | 6252 1594 | 3 | 5716 5209 1669 | 1 | 266 |
| NM_005901 | chr18 | 8 | 8617 8604 7791 1702 1692 469 384 65 | 1 | 2646 | - | - | 1 | 2733 |
| NM_006047 | chr20 | 6 | 3238 2819 2626 709 512 189 | 1 | 2595 | 1 | 2589 | 1 | 3119 |
| NM_006298 | chr6 | 6 | 2451 2274 2156 2142 2091 483 | - | - | 1 | 2626 | 1 | 468 |
| NM_006650 | chr5 | 16 | 3356 3126 2908 2825 2803 1566 1554 1522 1431 1360 1310 1295 1255 1238 1196 1103 | - | - | 2 | 3916 2911 | - | - |
| NM_007038 | chr21 | 4 | 5384 4191 2374 796 | - | - | 5 | 6062 5530 4397 945 803 | - | - |
| NM_013255 | chr7 | 6 | 8837 8422 6211 5532 1147 543 | 1 | 1910 | 2 | 6190 1184 | 3 | 8703 7052 1286 |
| NM_013261 | chr4 | 6 | 3344 1314 363 337 308 300 | - | - | - | - | 2 | 3721 2575 |
| NM_014423 | chr5 | 10 | 3825 3574 3534 2241 1256 1196 1078 952 703 648 | - | - | - | - | 1 | 3544 |
| NM_014992 | chr14 | 5 | 258 235 210 148 138 | - | - | - | - | 1 | 128 |
| NM_015271 | chr4 | 3 | 4194 3732 646 | - | - | - | - | 2 | 3977 3766 |
| NM_015317 | chr2 | 2 | 1022 58 | - | - | - | - | 3 | 2843 2829 62 |
| NM_015397 | chr9 | 6 | 747 489 472 456 424 414 | - | - | 3 | 463 431 87 | - | - |
| NM_015458 | chr8 | 7 | 5257 4967 1942 1391 938 922 630 | 1 | 4103 | 1 | 4946 | 2 | 1701 154 |
| NM_015569 | chr1 | 9 | 4242 4206 3310 3243 3232 3225 1471 1334 96 | - | - | 3 | 4251 3937 3272 | - | - |
| NM_015640 | chr1 | 8 | 5031 3793 3781 3738 967 957 855 507 | 1 | 325 | 2 | 4877 3329 | 1 | 971 |
| NM_015886 | chr8 | 4 | 4887 1593 364 340 | 2 | 3983 1106 | 1 | 4016 | 2 | 1309 372 |
| NM_016083 | chr6 | 4 | 3414 1090 1068 551 | 1 | 1078 | 2 | 3276 1071 | 1 | 2971 |
| NM_016507 | chr17 | 6 | 2955 2389 2383 2371 771 406 | - | - | 2 | 2394 2376 | 1 | 2520 |
| NM_017447 | chr21 | 5 | 4133 4023 3356 1709 956 | 1 | 1668 | 1 | 3480 | 2 | 4163 508 |
| NM_017644 | chr3 | 4 | 3585 1078 352 340 | 2 | 4285 316 | 1 | 4351 | 1 | 1994 |
| NM_017650 | chr7 | 10 | 5342 5162 5140 4722 1862 1619 815 491 321 136 | 1 | 5782 | - | - | 2 | 4865 4796 |
| NM_017813 | chr8 | 9 | 5577 5461 4751 3903 2277 2270 1504 1033 644 | - | - | 2 | 4305 1266 | - | - |
| NM_017848 | chrX | 9 | 1732 1577 1036 1014 936 912 889 881 837 | - | - | - | - | 1 | 875 |
| NM_017902 | chr10 | 18 | 5145 4707 3880 3715 1727 1039 953 935 913 874 864 852 562 357 337 329 299 264 | 1 | 4578 | - | - | - | - |
| NM_018157 | chr12 | 8 | 2671 2570 2370 1285 1165 940 928 588 | - | - | 2 | 945 361 | - | - |
| NM_018403 | chr3 | 5 | 4036 3700 3418 2670 804 | 2 | 4016 1072 | 1 | 3813 | 2 | 1614 808 |
| NM_018440 | chr8 | 6 | 8641 7718 7638 5583 3093 2359 | - | - | - | - | 2 | 2886 322 |
| NM_020718 | chr16 | 7 | 6493 6472 2421 1569 148 140 122 | - | - | 2 | 1092 133 | 1 | 1573 |
| NM_020772 | chr17 | 10 | 7801 7775 7213 6760 6334 3134 3112 2238 1452 1335 | 3 | 6545 1602 301 | 2 | 6879 3151 | - | - |
| NM_020844 | chr8 | 9 | 7428 6986 6941 5247 5133 5110 4812 1456 1292 | 1 | 6098 | - | - | 1 | 2634 |
| NM_020951 | chr19 | 7 | 2393 880 741 715 675 491 135 | 1 | 2051 | 3 | 744 729 680 | - | - |
| NM_021061 | chr8 | 3 | 641 562 541 | - | - | 1 | 1804 | 2 | 581 475 |
| NM_021072 | chr5 | 2 | 1607 921 | - | - | 1 | 2573 | 3 | 2480 2363 760 |
| NM_021813 | chr6 | 10 | 5384 5112 4808 4545 4457 4444 4428 4398 3643 2248 | 1 | 3869 | - | - | 1 | 2121 |
| NM_022781 | chr9 | 8 | 3165 2475 528 453 419 244 203 81 | - | - | 6 | 3339 494 468 446 273 137 | - | - |
| NM_024744 | chr2 | 3 | 1995 389 381 | - | - | 1 | 1844 | 2 | 2345 375 |
| NM_024900 | chr4 | 8 | 1825 1465 714 705 697 648 577 562 | - | - | 1 | 1796 | - | - |
| NM_024900 | chr4 | 8 | 1825 1465 714 705 697 648 577 562 | - | - | 1 | 1796 | - | - |
| NM_024947 | chr3 | 10 | 8110 6491 6436 3711 3625 3041 2687 2147 1825 1373 | 3 | 5861 549 472 | 1 | 6439 | 1 | 9340 |
| NM_025090 | chr17 | 15 | 606 376 358 349 280 271 242 213 186 160 146 120 109 76 65 | - | - | 1 | 114 | - | - |
| NM_032505 | chr3 | 4 | 2459 2313 2038 878 | - | - | - | - | 2 | 2218 2136 |
| NM_032968 | chrX | 6 | 3934 2804 1634 1415 872 343 | - | - | 2 | 4177 2798 | 1 | 4009 |
| NM_032969 | chrX | 6 | 3934 2804 1634 1415 872 343 | - | - | 2 | 4177 2798 | 1 | 4009 |
| NM_032973 | chrY | 5 | 3926 2799 1415 872 343 | - | - | 2 | 4169 2793 | 1 | 4001 |
| NM_033181 | chr6 | 4 | 3414 1090 1068 551 | 1 | 1078 | 2 | 3276 1071 | 1 | 2971 |
| NM_033224 | chr7 | 4 | 8079 6958 6123 4949 | 1 | 958 | 3 | 2081 1641 983 | 1 | 7486 |
| NM_053043 | chr7 | 10 | 6400 6348 5384 5154 5139 4285 2206 1762 1555 557 | - | - | 1 | 6362 | 1 | 6305 |
| NM_138459 | chr6 | 6 | 2591 1114 682 611 202 162 | - | - | 1 | 2621 | 3 | 2769 2669 208 |
| NM_152774 | chr7 | 6 | 2637 2479 2260 2001 726 716 | - | - | 1 | 2008 | 1 | 720 |
| NM_152838 | chr20 | 6 | 3238 2819 2626 709 512 189 | 1 | 2595 | 1 | 2589 | 1 | 3119 |
| NM_153607 | chr5 | 1 | 2635 | - | - | 1 | 645 | 2 | 995 987 |
| NM_173531 | chr19 | 4 | 3188 2373 1248 338 | - | - | 1 | 1192 | 2 | 2379 330 |
| NM_182493 | chr16 | 8 | 5353 5283 5223 5048 1975 1780 1472 423 | 3 | 5116 4667 220 | 2 | 5320 1477 | - | - |
| NM_182920 | chr3 | 6 | 187 135 123 115 104 86 | - | - | 1 | 107 | 1 | 1125 |
| NM_194328 | chr9 | 8 | 3165 2475 528 453 419 244 203 81 | - | - | 6 | 3339 494 468 446 273 137 | - | - |
| NM_194329 | chr9 | 8 | 3165 2475 528 453 419 244 203 81 | - | - | 6 | 3339 494 468 446 273 137 | - | - |
| NM_194330 | chr9 | 8 | 3165 2475 528 453 419 244 203 81 | - | - | 6 | 3339 494 468 446 273 137 | - | - |
| NM_194332 | chr9 | 8 | 3165 2475 528 453 419 244 203 81 | - | - | 6 | 3339 494 468 446 273 137 | - | - |
| NM_198560 | chr3 | 8 | 3669 2778 1257 1248 1237 1227 1212 1206 | 1 | 3484 | - | - | - | - |
| NM_198793 | chr3 | 7 | 3182 1285 1272 1264 1016 568 469 | - | - | 1 | 557 | 2 | 3188 1312 |
| NM_206855 | chr6 | 9 | 5385 4799 4534 2206 2120 1283 1272 606 429 | 1 | 782 | 2 | 5124 4364 | - | - |
| NM_213589 | chr2 | 9 | 5316 1203 667 313 205 199 175 132 98 | - | - | 2 | 3977 3789 | - | - |