Supplementary materials
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Analyzing miRNA co-expression networks to explore TF-miRNA regulation, BMC Bioinformatics, 10:163, 2009.
-- Sanghamitra Bandyopadhyay and Malay Bhattacharyya.
Supplementary details
Datasets studied
TF-miRNA regulation information from schizophrenia dataset
TF-miRNA regulation information from stem cell dataset
TF-miRNA regulation information from tissue-specific dataset
Technical report no. MIU/TR-03/08
Softwre deliverables for the Quartile Deviation Plot (QDP)
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A Novel Method of Studying the Disease Regulatory Activities of MicroRNAs, Current Bioinformatics, 4(3), pp. 234-241, 2009.
-- Sanghamitra Bandyopadhyay and Malay Bhattacharyya.
Supplementary details
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PuTmiR: A database for extracting neighboring transcription factors of human microRNAs, BMC Bioinformatics, 11:190, 2010.
-- Sanghamitra Bandyopadhyay and Malay Bhattacharyya.
Putative TF-miRNA regulation in 10kb upstream
Putative TF-miRNA regulation in 10kb downstream
Web server
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A Biologically Inspired Measure for Co-expression Analysis, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2010 (Accepted).
-- Sanghamitra Bandyopadhyay and Malay Bhattacharyya.
BioSim in MATLAB