

Quick Start
===========

Before using brain MR volume segmentation or HEp-2 cell image segmentation make sure the directory contains these files:
1> The input image
		- in PGM P5 format (.pgm) for HEp-2 cell image segmentation or
		- in NIFTI format (.nii) for brain MR volume segmentation.
2> Binary brain mask in NIFTI format (.nii) for brain MR volume segmentation. It is not required in HEp-2 cell image segmentation.


Installation
=============

On Unix systems with 64-bit, read-write-execute permission is to be given to the srfcm.out, srfcm_alpha.out, and r.out by using the command "chmod 777 *.out".


Examples
========

$ chmod 777 srfcm.out
$ chmod 777 srfcm_alpha.out
$ chmod 777 r.out
$./srfcm.out -h
	 
