TargetMiner : Prediction of miRNA Targets
miRNA ID: hsa-miR-3909
miRNA Sequence: UGUCCUCUAGGGCCUGCAGUCU
| mRNA | Chromosome | 6mer (count) | 6mer (position) | 7mer-A1 (count) | 7mer-A1 (position) | 7mer-m8 (count) | 7mer-m8 (position) | 8mer (count) | 8mer (position) |
| NM_000599 | chr2 | 14 | 4032 3777 3539 3412 3341 2977 1718 1709 1601 1579 1504 288 276 143 | 2 | 3395 921 | 3 | 4039 3661 1588 | 1 | 3730 |
| NM_000618 | chr12 | 8 | 6475 5681 5138 1704 1126 1072 1004 975 | - | - | 1 | 5220 | 1 | 5727 |
| NM_000618 | chr12 | 8 | 6475 5681 5138 1704 1126 1072 1004 975 | - | - | 1 | 5220 | 1 | 5727 |
| NM_000793 | chr14 | 7 | 4821 4596 4163 1347 897 713 251 | - | - | 2 | 4109 3671 | 1 | 3531 |
| NM_000831 | chr1 | 14 | 6087 5685 5459 4664 2102 1854 1571 1247 853 783 625 617 98 45 | - | - | 3 | 3830 1933 791 | 2 | 4778 335 |
| NM_001005404 | chr17 | 8 | 4104 3714 1404 1304 1033 990 388 380 | 2 | 3614 3027 | 2 | 2747 1009 | - | - |
| NM_001005473 | chr5 | 16 | 6417 6333 6029 2467 1889 1205 1076 1068 1056 1048 1036 1016 1000 955 704 137 | 1 | 6005 | - | - | - | - |
| NM_001005609 | chrX | 9 | 3641 3251 3191 2623 2553 1169 996 484 330 | 2 | 2869 1159 | 3 | 2838 2693 2518 | - | - |
| NM_001007023 | chr14 | 7 | 4821 4596 4163 1347 897 713 251 | - | - | 2 | 4109 3671 | 1 | 3531 |
| NM_001008701 | chr19 | 10 | 2532 2426 2215 2065 561 471 355 269 249 74 | 1 | 2261 | 2 | 260 154 | 1 | 1974 |
| NM_001009993 | chr2 | 8 | 4019 3839 3681 3302 2967 1707 1413 22 | 3 | 3285 1747 1329 | 3 | 4029 1364 1250 | 1 | 3814 |
| NM_001014797 | chr10 | 14 | 7425 7161 6937 6917 6750 6677 6664 6533 6271 5692 5293 2744 2301 912 | - | - | 1 | 6145 | 3 | 7959 1134 646 |
| NM_001017440 | chr7 | 16 | 7744 7203 6961 6655 6582 6378 5450 5098 3191 3002 2553 2432 2261 1806 546 481 | 3 | 5536 2118 1720 | 3 | 2264 943 628 | 1 | 7304 |
| NM_001017995 | chr5 | 9 | 4753 4508 4018 3505 3002 1352 1339 998 992 | - | - | 2 | 1006 25 | - | - |
| NM_001018065 | chr9 | 9 | 5596 5517 5467 5451 5151 2231 2015 1120 74 | - | - | 1 | 5599 | 1 | 4410 |
| NM_001018066 | chr9 | 9 | 5596 5517 5467 5451 5151 2231 2015 1120 74 | - | - | 1 | 5599 | 1 | 4410 |
| NM_001024455 | chrX | 9 | 2610 2559 2545 2507 1087 1046 894 885 876 | 1 | 1833 | 4 | 2184 2164 587 575 | 1 | 450 |
| NM_001030288 | chr16 | 15 | 4596 4129 3994 3889 2126 2035 1969 1954 1858 1789 1689 1668 1353 1178 1103 | 2 | 1947 1199 | - | - | 1 | 3586 |
| NM_001031695 | chr22 | 15 | 5405 4563 4417 4367 3659 3547 3538 2172 2119 1984 1001 966 346 101 78 | 2 | 1160 438 | 1 | 1838 | 1 | 2004 |
| NM_001039577 | chr1 | 6 | 4205 4054 1618 1422 1416 1410 | 1 | 3309 | 1 | 1434 | - | - |
| NM_001042601 | chr3 | 1 | 2392 | 1 | 2598 | - | - | 2 | 2583 2352 |
| NM_001100108 | chr1 | 12 | 8068 7747 7529 7452 6898 6563 2688 2287 2051 1922 1054 43 | - | - | 1 | 2044 | 2 | 8112 7428 |
| NM_001106 | chr3 | 12 | 9747 8502 6235 3813 3517 2918 1114 1046 751 640 471 425 | 2 | 3845 3531 | 4 | 6243 3564 3343 1074 | - | - |
| NM_001399 | chrX | 9 | 3641 3251 3191 2623 2553 1169 996 484 330 | 2 | 2869 1159 | 3 | 2838 2693 2518 | - | - |
| NM_001543 | chr5 | 15 | 4781 4753 4682 4663 4569 4556 4321 3929 3828 3091 2992 1711 1324 889 410 | 1 | 1908 | 3 | 4669 4615 535 | - | - |
| NM_001759 | chr12 | 4 | 4241 3920 3365 342 | - | - | - | - | 3 | 4495 4136 4103 |
| NM_002223 | chr12 | 3 | 3534 2486 78 | - | - | 1 | 3957 | 2 | 2971 274 |
| NM_002522 | chr17 | 10 | 3389 3315 3285 1490 1387 1107 1005 930 681 370 | 2 | 1534 700 | 3 | 1008 918 296 | 1 | 3454 |
| NM_002886 | chr3 | 5 | 4613 3180 797 631 520 | - | - | - | - | 2 | 4652 4404 |
| NM_003099 | chr15 | 15 | 6296 6180 5502 5386 5322 5121 4973 4961 4915 4763 4388 4281 1400 1102 651 | 1 | 5550 | 1 | 4901 | - | - |
| NM_003108 | chr2 | 15 | 6971 6885 4689 2708 2487 2469 2304 2233 2227 1789 1687 420 401 138 59 | 3 | 5340 2404 2098 | 2 | 7292 493 | 1 | 2514 |
| NM_003123 | chr16 | 15 | 4596 4129 3994 3889 2126 2035 1969 1954 1858 1789 1689 1668 1353 1178 1103 | 2 | 1947 1199 | - | - | 1 | 3586 |
| NM_004491 | chr19 | 13 | 3400 3115 3079 2936 2804 2698 2675 1659 933 868 552 375 228 | 7 | 3666 3544 3452 1107 954 584 89 | 1 | 1486 | 1 | 2750 |
| NM_005504 | chr12 | 3 | 5316 5277 1313 | - | - | 1 | 980 | 2 | 6534 36 |
| NM_005596 | chr9 | 6 | 2413 2079 2033 952 906 178 | 3 | 6253 5576 1011 | - | - | 1 | 5135 |
| NM_005840 | chrX | 15 | 7521 7472 7443 7236 6750 6334 6030 3049 2678 2649 2022 290 138 84 78 | 1 | 1877 | 2 | 7647 2025 | - | - |
| NM_005920 | chr1 | 10 | 3631 3609 3458 3038 2799 1097 935 500 408 207 | 3 | 2496 795 288 | 2 | 1030 784 | 1 | 3187 |
| NM_005935 | chr4 | 9 | 5228 5032 4825 4272 1599 1264 1145 780 737 | - | - | 2 | 5292 1165 | 2 | 4425 4364 |
| NM_005937 | chr17 | 13 | 3978 3689 3480 2798 2667 1243 1148 1126 891 643 235 174 160 | - | - | 2 | 3400 894 | 1 | 650 |
| NM_005941 | chr8 | 3 | 2749 304 140 | - | - | - | - | 2 | 3956 2613 |
| NM_006095 | chr4 | 2 | 3021 101 | - | - | 1 | 269 | 2 | 1231 758 |
| NM_006203 | chr5 | 7 | 5205 5199 5103 2138 1749 1692 459 | - | - | - | - | 2 | 5000 4377 |
| NM_006282 | chr20 | 8 | 3951 3481 3469 1782 1167 953 808 21 | 1 | 491 | 1 | 1488 | 2 | 1772 498 |
| NM_006544 | chr14 | 5 | 4996 4623 4297 779 45 | - | - | - | - | 2 | 5611 4324 |
| NM_006546 | chr17 | 16 | 6333 5443 5226 5089 4688 4070 2608 2599 1976 1947 1930 1507 1209 985 633 294 | - | - | 2 | 4292 947 | 1 | 4542 |
| NM_007238 | chr20 | 9 | 4738 4681 4470 4453 3855 3692 1810 704 297 | 2 | 3718 1149 | 3 | 4807 3724 361 | 1 | 1062 |
| NM_007249 | chr13 | 8 | 8827 3524 2496 2292 1497 1049 883 708 | 1 | 7799 | 2 | 9182 1490 | - | - |
| NM_012164 | chr9 | 8 | 5894 3017 1885 1622 1423 1314 1248 174 | - | - | 2 | 7407 262 | 1 | 5087 |
| NM_012334 | chr5 | 7 | 3861 3812 3196 1441 1418 262 149 | 1 | 4025 | 1 | 4131 | 3 | 4561 494 240 |
| NM_013382 | chr14 | 10 | 2301 1962 1704 1536 966 764 617 591 275 258 | 3 | 856 486 309 | 1 | 476 | 1 | 219 |
| NM_013989 | chr14 | 7 | 4821 4596 4163 1347 897 713 251 | - | - | 2 | 4109 3671 | 1 | 3531 |
| NM_014309 | chr22 | 15 | 5395 4553 4407 4357 3649 3537 3528 2162 2109 1974 991 956 336 91 68 | 2 | 1150 428 | 1 | 1828 | 1 | 1994 |
| NM_014423 | chr5 | 6 | 5104 5008 3445 1745 939 766 | 1 | 772 | - | - | 1 | 2028 |
| NM_014730 | chr12 | 9 | 4729 4394 3966 2091 1967 1535 955 746 329 | 2 | 4275 252 | 2 | 4526 4211 | 1 | 3297 |
| NM_014730 | chr12 | 9 | 4729 4394 3966 2091 1967 1535 955 746 329 | 2 | 4275 252 | 2 | 4526 4211 | 1 | 3297 |
| NM_014747 | chr1 | 12 | 5371 5364 4186 4083 2007 1849 1542 1039 1005 682 663 544 | - | - | 1 | 675 | 1 | 873 |
| NM_014767 | chr10 | 18 | 3601 3269 3161 2951 2765 2314 1448 1392 1368 1296 1107 1097 863 844 740 545 119 31 | 2 | 999 748 | - | - | - | - |
| NM_014921 | chr19 | 10 | 2532 2426 2215 2065 561 471 355 269 249 74 | 1 | 2261 | 2 | 260 154 | 1 | 1974 |
| NM_014935 | chr1 | 10 | 3783 3448 2691 1389 1268 937 843 651 428 413 | 3 | 1314 704 370 | 1 | 175 | 1 | 3725 |
| NM_015035 | chr20 | 15 | 6649 6358 5929 5904 5078 5018 4996 4892 4832 4767 4664 4589 4386 1425 1222 | 1 | 6070 | 1 | 2273 | 1 | 1578 |
| NM_015042 | chr15 | 6 | 3592 2730 2716 1400 528 302 | - | - | 2 | 3038 1737 | 2 | 2942 1648 |
| NM_015051 | chr9 | 7 | 3192 3007 2550 1051 578 452 329 | 2 | 3306 2482 | 3 | 2903 1058 950 | 2 | 2448 1096 |
| NM_015068 | chr7 | 7 | 3469 1233 1204 1139 916 494 439 | 2 | 1188 447 | 3 | 3751 3139 1324 | - | - |
| NM_015090 | chr1 | 15 | 6140 5832 4541 4467 4209 3954 3882 2079 1638 1616 1314 1208 142 56 43 | 1 | 5448 | 2 | 1265 994 | 2 | 2041 1023 |
| NM_015173 | chr4 | 6 | 1700 1226 638 414 113 59 | - | - | - | - | 2 | 1609 547 |
| NM_015310 | chr8 | 13 | 7474 7146 6834 6688 6516 6413 3337 2667 2560 2051 1371 687 235 | - | - | - | - | 2 | 6172 3249 |
| NM_015375 | chr1 | 7 | 3940 3703 3581 3232 1639 1633 671 | 2 | 3101 466 | 2 | 3739 3145 | 1 | 3643 |
| NM_015879 | chr18 | 13 | 8399 8321 8043 7572 7416 6315 2928 2460 2335 2175 1853 1084 314 | - | - | 1 | 1941 | 1 | 6400 |
| NM_016089 | chr3 | 5 | 2063 1951 1897 647 227 | 3 | 720 300 276 | - | - | 4 | 804 468 384 48 |
| NM_017637 | chr9 | 15 | 8978 8780 8656 8578 8570 7894 7321 7083 6910 5868 3214 2322 1863 1639 842 | - | - | 1 | 2278 | - | - |
| NM_017824 | chr10 | 3 | 1969 408 149 | 1 | 2399 | 1 | 839 | 1 | 452 |
| NM_017848 | chrX | 5 | 3446 3430 1468 77 36 | 3 | 2939 428 82 | 3 | 1678 1545 1117 | - | - |
| NM_019008 | chr22 | 7 | 3740 3190 1357 1263 1127 950 840 | - | - | 1 | 3332 | 2 | 2721 1163 |
| NM_020182 | chr20 | 7 | 3010 2554 2204 727 506 80 71 | 2 | 2590 442 | 1 | 1107 | 1 | 2896 |
| NM_020440 | chr1 | 8 | 3108 2911 2355 1049 901 890 813 28 | 1 | 824 | 1 | 880 | 1 | 62 |
| NM_020772 | chr17 | 11 | 8254 8006 7336 6318 6111 6086 6002 5591 3066 1038 101 | 4 | 8044 5361 683 61 | - | - | - | - |
| NM_021116 | chr7 | 20 | 8787 7299 6945 6717 5854 3222 3207 2785 2670 2273 2252 1714 1478 1329 1278 1201 1186 207 163 127 | 3 | 8036 2044 212 | 4 | 8142 7748 7712 2741 | - | - |
| NM_021120 | chrX | 10 | 3157 3079 2654 2586 2141 1203 1190 816 791 332 | 2 | 2889 1195 | 1 | 2191 | - | - |
| NM_022048 | chr15 | 6 | 6139 6011 4139 1316 457 35 | - | - | 1 | 5092 | 4 | 5152 2391 1288 892 |
| NM_022648 | chr2 | 17 | 4224 4168 4096 4016 3583 3442 3410 3217 3192 3162 732 414 213 159 142 114 93 | - | - | 2 | 3195 56 | 2 | 3084 1442 |
| NM_022719 | chr22 | 11 | 3203 3159 2996 2436 1307 1221 1175 1169 1130 916 830 | 4 | 1291 1138 1111 1073 | 1 | 70 | - | - |
| NM_022912 | chr2 | 3 | 1014 917 794 | - | - | - | - | 2 | 2536 1875 |
| NM_024807 | chr6 | 10 | 1753 1498 1459 1391 537 527 499 307 102 58 | 1 | 1449 | - | - | 2 | 1867 1490 |
| NM_024989 | chr2 | 7 | 7847 6340 5963 3082 1803 261 58 | - | - | - | - | 1 | 7731 |
| NM_025179 | chr1 | 12 | 3371 3309 3048 1960 1740 1563 1260 804 689 601 134 31 | 4 | 4933 3754 1700 285 | 3 | 3160 3130 1948 | - | - |
| NM_031468 | chr7 | 16 | 7744 7203 6961 6655 6582 6378 5450 5098 3191 3002 2553 2432 2261 1806 546 481 | 3 | 5536 2118 1720 | 3 | 2264 943 628 | 1 | 7304 |
| NM_031886 | chr19 | 7 | 2573 2351 2326 1720 991 85 42 | 2 | 68 56 | - | - | 1 | 1787 |
| NM_032193 | chr11 | 7 | 2057 1686 1476 1418 748 727 382 | 2 | 1409 1401 | 1 | 782 | - | - |
| NM_052906 | chr22 | 25 | 4921 4645 4483 4208 4161 3908 3704 3248 2039 1866 1617 1469 1455 1314 1215 1159 1065 1050 1039 829 514 433 404 338 321 | 3 | 4133 3427 1908 | 4 | 4486 1917 114 39 | 1 | 3223 |
| NM_080669 | chr17 | 18 | 4455 3772 3541 3435 3363 1913 1688 1621 1441 1264 1137 1039 516 496 357 308 240 33 | 2 | 3235 1540 | 2 | 4106 4071 | 1 | 27 |
| NM_130847 | chr11 | 10 | 5462 4842 2048 1829 1773 1592 1478 527 520 307 | - | - | - | - | 2 | 2070 2012 |
| NM_138473 | chr12 | 10 | 4459 4400 4274 3873 3771 3282 1096 477 150 137 | 1 | 2023 | 1 | 4024 | - | - |
| NM_148955 | chr15 | 15 | 6296 6180 5502 5386 5322 5121 4973 4961 4915 4763 4388 4281 1400 1102 651 | 1 | 5550 | 1 | 4901 | - | - |
| NM_152470 | chr18 | 13 | 3384 3334 3178 2928 1477 1205 960 778 235 179 164 135 103 | 2 | 3063 2996 | 2 | 3072 2918 | 1 | 1634 |
| NM_152826 | chr15 | 15 | 6296 6180 5502 5386 5322 5121 4973 4961 4915 4763 4388 4281 1400 1102 651 | 1 | 5550 | 1 | 4901 | - | - |
| NM_153456 | chr13 | 7 | 6126 4790 4518 4501 2283 1404 702 | 1 | 95 | 3 | 6234 5653 5119 | - | - |
| NM_173065 | chr1 | 10 | 2729 2698 2348 1421 915 588 582 527 117 37 | 3 | 662 614 134 | 2 | 654 109 | - | - |
| NM_173595 | chr12 | 16 | 5113 4677 4659 4580 4463 4453 4194 3902 3865 3375 1724 1323 1240 888 342 120 | 6 | 5095 4646 4086 4063 797 542 | 2 | 4110 528 | - | - |
| NM_173642 | chr1 | 13 | 8246 8123 8001 7856 6598 6399 6391 6221 3572 3487 3477 3361 1620 | 1 | 6911 | 1 | 470 | - | - |
| NM_175624 | chr12 | 9 | 6048 5757 5737 2872 2733 2371 2358 1909 88 | 2 | 7203 1669 | 2 | 5645 1435 | - | - |
| NM_175625 | chr12 | 9 | 6048 5757 5737 2872 2733 2371 2358 1909 88 | 2 | 7203 1669 | 2 | 5645 1435 | - | - |
| NM_175736 | chr12 | 15 | 5754 5701 3061 2902 2731 2671 2445 2439 2286 1275 1218 996 519 334 325 | 4 | 5817 2917 2361 1419 | 3 | 2503 1449 90 | 3 | 6780 3127 721 |
| NM_175861 | chr12 | 4 | 4319 3983 224 52 | - | - | - | - | 2 | 4563 421 |
| NM_183397 | chr20 | 9 | 4962 4905 4694 4677 4079 3916 2034 928 521 | 3 | 3942 1373 162 | 3 | 5031 3948 585 | 1 | 1286 |
| NM_194286 | chr12 | 15 | 6008 5712 4743 3971 3949 1716 1286 1158 599 473 462 145 137 131 97 | 1 | 1868 | 3 | 5935 2044 1495 | 1 | 707 |
| NM_198270 | chrX | 5 | 2992 1387 1367 60 54 | 1 | 1008 | 1 | 74 | 2 | 3066 274 |
| NM_198560 | chr3 | 15 | 3657 3345 3305 3192 3066 3035 3022 2839 2649 2408 2343 2334 365 179 151 | 1 | 1279 | 2 | 2600 926 | - | - |
| NM_198900 | chr12 | 15 | 5754 5701 3061 2902 2731 2671 2445 2439 2286 1275 1218 996 519 334 325 | 4 | 5817 2917 2361 1419 | 3 | 2503 1449 90 | 3 | 6780 3127 721 |
| NM_199169 | chr20 | 7 | 3010 2554 2204 727 506 80 71 | 2 | 2590 442 | 1 | 1107 | 1 | 2896 |
| NM_199170 | chr20 | 7 | 3010 2554 2204 727 506 80 71 | 2 | 2590 442 | 1 | 1107 | 1 | 2896 |
| NM_199171 | chr20 | 7 | 3010 2554 2204 727 506 80 71 | 2 | 2590 442 | 1 | 1107 | 1 | 2896 |
| NM_199462 | chr1 | 7 | 3940 3703 3581 3232 1639 1633 671 | 2 | 3101 466 | 2 | 3739 3145 | 1 | 3643 |
| NM_206909 | chr8 | 13 | 7474 7146 6834 6688 6516 6413 3337 2667 2560 2051 1371 687 235 | - | - | - | - | 2 | 6172 3249 |
| NM_212558 | chr9 | 7 | 4248 3780 3736 2839 2765 2698 1404 | 3 | 4261 1414 171 | - | - | - | - |
| NM_213589 | chr2 | 8 | 5443 5429 5039 3871 3854 1561 1219 307 | - | - | 1 | 894 | 1 | 5221 |