Computational Molecular Biology and Bioinformatics - Fall 2021

MTech (CS) : 2nd Year, 1st Semester

GENERAL INFORMATION

LECTURE DETAILS

Topic Lecture Date Lecture Topics Notes Resources
0 1-2 06-10-2021 Basics of Molecular Biology Slides [PDF] [R1, R5, R6]
I 3-4 08-10-2021 Introduction to Computational Biology and Bioinformatics Slides [PDF] [R1, R2]
... 5-6 20-10-2021 ... ...
II 7-8 22-10-2021 Sequence Alignment Slides [PDF] [R1, R2, R3, R4]
... 9-10 27-10-2021 ... ...
... 11-12 29-10-2021 ... ...
III 13-14 03-11-2021 Genome Assembly Slides [PDF]
... 15-16 05-11-2021 ... ...
... 17-18 10-11-2021 ... ...
IV 19-20 12-11-2021 Gene Finding Slides [PDF]
V 21-22 17-11-2021 Motif Analysis Slides [PDF]
... 23-24 24-11-2021 ... ...
VI 25-26 26-11-2021 Transcriptome Analysis Slides [PDF]
Mid-semester examination break (29-11-2021 to 03-12-2021) Mid Semester Paper, Answer Keys
VII 27-28 08-12-2021 Microarray Analysis Slides [PDF]
... 29-30 10-12-2021 ... ...
VIII 31-32 22-12-2021 Protein Dynamics Slides [PDF]
... 33-34 24-12-2021 ... ...
IX 35-36 29-12-2021 Phylogenetic Analysis Slides [PDF]
X 37-38 05-01-2022 Metagenomics Slides [PDF]
XI 39-40 07-01-2022 Systems Biology Slides [PDF] [R7, R8]
... 41-42 12-01-2022 ... ...
XII 43-44 14-01-2022 Disease Modelling Slides [PDF]
XIII 45-46 19-01-2022 Tools Slides [PDF]


COURSE PLAN

No dues

ASSIGNMENTS

Set Due Date Solutions
Assignment 1 15-11-2021 Answer Keys
Assignment 2 15-12-2021 Answer Keys
Assignment 3 15-01-2022 Answer Keys


PROJECTS

Set Due Date Allotment
Projects 15-02-2022 Details


OTHERS

Topic Details
Attendance Link


REFERENCES

  1. C. Setubal and J. Meidanis: Introduction to Computational Molecular Biology, PWS Publishing Company, Boston, 1997.
  2. P. A. Pevzner: Computational Molecular Biology – An Algorithmic Approach, MIT Press, 2000.
  3. R. Durbin, S. R. Eddy, A. Krogh and G. Mitchison: Biological Sequence Analysis - Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press, 1998.
  4. D. Gusfield: Algorithms on Strings, Trees, and Sequences, Cambridge University Press, USA, 1997.
  5. H. Lodish, A. Berk, S. L. Zipursky, P. Matsudaira, D. Baltimore and J. Darnell: Molecular Cell Biology, W. H. Freeman, USA, 2000.
  6. C.-I. Branden, J. Tooze: Introduction to Protein Structure, Garland Publishing, 1998.
  7. A. Kowald, C.hristoph Wierling, E. Klipp, and W. Liebermeister: Systems Biology, Wiley-VCH, 2016.
  8. B.O. Palsson: Systems Biology – Constraint based Reconstruction and Analysis, Cambridge Univer- sity Press, 2015.