Computational Molecular Biology and Bioinformatics - Fall 2024

MTech (CS) : 2nd Year, 1st Semester

GENERAL INFORMATION

LECTURE DETAILS

Topic Lecture Date Lecture Topics Notes Resources
0 1-2 23-07-2024 Basics of Molecular Biology Slides [PDF] [R1, R5, R6]
I 3-4 25-07-2024 Introduction to Computational Biology and Bioinformatics Slides [PDF] [R1, R2]
II 5-6 30-07-2024 Sequence Alignment Slides [PDF] [R1, R2, R3, R4]
... 7-8 01-08-2024 ... ...
... 9-10 06-08-2024 ... ...
... 11-12 08-08-2024 ... ...
III 13-14 13-08-2024 Genome Assembly Slides [PDF]
... 15-16 20-08-2024 ... ...
... 17-18 22-08-2024 ... ...
IV 17-18 27-08-2024 Gene Finding Slides [PDF]
IV 19-20 29-08-2024 Motif Analysis Slides [PDF]
... 21-22 03-09-2024 ... ...
VI 23-24 05-09-2024 Transcriptome Analysis Slides [PDF]
Mid-semester examination break (09-09-2024 to 16-09-2024) Mid Semester Paper, Answer Keys
VII 25-26 19-09-2024 Expression Analysis Slides [PDF]
... 27-28 26-09-2024 ... ...
VIII 29-30 24-09-2024 Protein Dynamics Slides [PDF]
... 31-32 03-10-2024 ... ...
IX 33-34 15-10-2024 Phylogenetic Analysis Slides [PDF]
X 35-36 17-10-2024 Metagenomics Slides [PDF]
XI 37-38 15-10-2024 Systems Biology Slides [PDF] [R7, R8]
... 39-40 22-10-2024 ... ...
XII 41-42 29-10-2024 Disease Modelling Slides [PDF]
XIII 43-44 05-11-2024 Tools Slides [PDF]


COURSE PLAN

No dues

ASSIGNMENTS

Set Due Date Solutions
Assignment 1 15-08-2024 Answer Keys
Assignment 2 15-09-2024 Answer Keys
Assignment 3 15-10-2024 Answer Keys


PROJECTS

Set Due Date Allotment
Projects 15-12-2024 Details


OTHERS

Topic Details
Attendance Link


REFERENCES

  1. C. Setubal and J. Meidanis: Introduction to Computational Molecular Biology, PWS Publishing Company, Boston, 1997.
  2. P. A. Pevzner: Computational Molecular Biology � An Algorithmic Approach, MIT Press, 2000.
  3. R. Durbin, S. R. Eddy, A. Krogh and G. Mitchison: Biological Sequence Analysis - Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press, 1998.
  4. D. Gusfield: Algorithms on Strings, Trees, and Sequences, Cambridge University Press, USA, 1997.
  5. H. Lodish, A. Berk, S. L. Zipursky, P. Matsudaira, D. Baltimore and J. Darnell: Molecular Cell Biology, W. H. Freeman, USA, 2000.
  6. C.-I. Branden, J. Tooze: Introduction to Protein Structure, Garland Publishing, 1998.
  7. A. Kowald, C.hristoph Wierling, E. Klipp, and W. Liebermeister: Systems Biology, Wiley-VCH, 2016.
  8. B.O. Palsson: Systems Biology � Constraint based Reconstruction and Analysis, Cambridge Univer- sity Press, 2015.